FastQCFastQC Report
Wed 31 May 2023
EGAF00007938526

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938526
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences517455
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG43400.8387202751930118No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC16710.3229266313012726No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8910.1721888859900861No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA8800.1700630972741591No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8630.16677778744045377No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA8420.1627194635282295No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8380.1619464494497106No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8320.16078692833193226No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7980.15421630866452155No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT6830.13199215390710303No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGC6730.1300596187108058No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6390.12348899904339508No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT6370.12310249200413563No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6060.1171116328956141No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5210.10068508372708738No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)