FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007938527

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938527
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences543951
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10960.20148873703697573No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT10580.19450281367255506No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT6060.11140709365365631No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT6050.1112232535651189No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5830.10717877161729641No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG5630.10350196984654866No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)