FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007938528

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938528
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences543951
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG15600.28679053811832317No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10880.20001801632867666No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG10620.1952381740267046No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7460.13714470604889042No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA6070.1115909337421937No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6060.11140709365365631No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5930.10901717250267028No Hit
ATGTCTGACGAAGGCCCGGGTACCGGCCCGG5750.10570805090899732No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5550.10203124913824958No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)