FastQCFastQC Report
Sun 21 May 2023
EGAF00007938529

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938529
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences600000
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG19240.32066666666666666No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT17360.28933333333333333No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT16820.2803333333333333No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC14080.23466666666666666No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC13230.2205No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG11030.18383333333333332No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC10650.17750000000000002No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT9980.16633333333333333No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG9500.15833333333333333No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG8900.14833333333333332No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT8720.14533333333333334No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA8390.13983333333333334No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC8220.13699999999999998No Hit
TGCGTCTTCGAAATCCTCGTCATCGTCATCTTCTTCTTCACGCA7890.1315No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG7740.129No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA7200.12No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG7140.11900000000000001No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG7040.11733333333333333No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG6870.11449999999999999No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC6720.11199999999999999No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC6690.11150000000000002No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG6680.11133333333333334No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT6650.11083333333333334No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC6430.10716666666666667No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT6420.107No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG6390.1065No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6330.1055No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG6240.104No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)