FastQCFastQC Report
Sun 21 May 2023
EGAF00007938531

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938531
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences560482
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA28590.5100966667975064No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA26380.47066631934656245No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG16490.2942110540570438No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG13210.23568999539681917No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG13020.2323000560232086No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG11620.20732155537555177No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC11150.1989359158724098No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG11040.19697331939295104No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG10000.17841786176897742No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG9830.1753847581189048No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9120.1627170899333074No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG8850.157899807665545No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT8620.1537961968448585No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA8390.14969258602417207No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT7610.13577599280619182No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG7580.1352407392208849No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG7160.12774718902658783No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA6670.11900471379990794No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC6640.11846946021460099No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG6630.11829104235283201No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA6560.11704211732044918No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6480.11561477442629736No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT6480.11561477442629736No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG6410.11436584939391453No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6370.1136521779468386No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6320.11276008863799372No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG6020.10740755278492439No Hit
AACGCTGGATTCGGTACGGGAGTGGTAGTTTTTTACGTGACGAG5900.10526653844369668No Hit
CATGGTATCACCTGGAACAACCTGGCTAGTGTGGCCGGTTTCAG5900.10526653844369668No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)