FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007938533

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938533
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences554661
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT24070.4339587603959897No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC19250.34705883413472377No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC18910.340928963817539No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC12830.23131245932200029No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG11860.21382429988767915No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA10120.18245378708796903No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9970.1797494325362699No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA8850.15955691855024962No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC8110.1462154360952005No Hit
ACGGCGGAAGGCATACGGGTTGTCTTCGTCTGGCGCATCAATAT6490.11700840693684972No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG6340.11430405238515057No Hit
CAGAGCGAAAGTAATGTTTTTGCCATCACGCTTAACCTTCAGGT5650.1018640214473345No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)