FastQCFastQC Report
Wed 31 May 2023
EGAF00007938534

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938534
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences554661
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA48340.8715233268609115No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA26920.4853414968782734No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA24710.44549733981657264No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT19100.34435447958302456No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG15410.27782735761122557No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10260.18497785133622158No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC8090.14585485548830726No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC6950.12530176089539374No Hit
GACGCTAACGGCAACAACCTGACTTTCGAAC6610.11917189057820904No Hit
GGTGACGTTGCTAAAGCGATCAATGACGCGG5670.10222460205422772No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)