FastQCFastQC Report
Wed 31 May 2023
EGAF00007938538

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938538
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences421384
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG46961.1144229491390276No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6600.15662673475974406No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6460.15330434947696164No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5830.1383536157044406No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5800.13764167600098723No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC5100.12102974958707498No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG4860.1153342319594479No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG4790.1136730393180567No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)