FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007938540

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938540
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences416860
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22110.5303938972316845No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT12900.3094564122247277No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA7710.1849541812598954No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6710.16096531209518783No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5690.1364966655471861No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)