FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007938542

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938542
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences427481
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG48351.131044420687703No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT13210.3090195821568678No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA12490.29217672832242836No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9360.21895709984771253No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6420.15018211335708487No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6410.14994818483160657No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5760.1347428306755154No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5690.13310533099716712No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5240.12257854735064248No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT4900.11462497748437941No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)