FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007938543

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938543
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences462553
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AACAGCGGTAGACGGAGCGGAAGAGGCCAGAGCGCCAGTACCCG19550.422654268808115No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA13810.2985603811887502No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA12210.26396975049345694No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT9130.19738278640501739No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC8320.17987127961552513No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC6690.1446320745946951No Hit
AACCGCCGGCGGGCCGGTATCGCTTGGGGATACGGTTGGCGGTG5660.12236435608460004No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5440.1176081443639972No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC4990.10787952948094597No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG4960.10723095515540922No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)