FastQCFastQC Report
Wed 31 May 2023
EGAF00007938544

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938544
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences462553
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG47061.0173969253253141No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT32810.7093241206953581No Hit
CGTCGCCAGCGTGCAATCGACAAACGCCAGC22310.48232310675749596No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA19160.41422280257613725No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10360.2239743337520241No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8950.19349134045179686No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6640.14355111738546716No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5770.12474246194490145No Hit
ATCGAAGTGATTGACGTTGAAACCACTGAAG5600.12106720743352654No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5370.11609480427107813No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4990.10787952948094597No Hit
GATGCGGCCTCCAATTCTGCAAACCGTCAGG4890.10571761506249014No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)