FastQCFastQC Report
Wed 31 May 2023
EGAF00007938545

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938545
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences447778
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT13770.307518457807217No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC10420.23270459915404507No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT8590.19183613308380493No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7710.17218353737789707No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6690.14940439235514028No Hit
TTTAGTGCCGTTGACTGCAATTTCAACACGGCGGTCCGGCGCCA5470.1221587483083135No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5440.12148877345470299No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT5350.11947884889387153No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5270.11769224928424352No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)