FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007938546

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938546
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences447778
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22220.49622804157417294No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14600.32605442875710733No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14230.3177914055625779No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9190.2052356301560148No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT8930.19942918142472388No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8070.18022323562122303No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7170.1601239900129082No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5940.13265502101487792No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5900.1317617212100639No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5850.13064509645404643No Hit
TTCGTGGCAAAAGGTGTAGCCGCGGACGCCA5690.12707189723479045No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5560.12416867286914497No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5040.11255577540656309No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC4480.10004957813916718No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)