FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007938548

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938548
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences419350
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG45611.087635626564922No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT12320.2937880052462144No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11810.281626326457613No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9960.23751043281268633No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9720.23178728985334446No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8860.21127936091570287No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8820.21032550375581255No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8010.19100989626803386No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7230.1724096816501729No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG6800.16215571718135208No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6560.15643257422201026No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6170.14713246691307977No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5920.14117085966376536No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5420.12924764516513654No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5280.12590914510552045No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA5270.12567068081554789No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4920.11732443066650769No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG4650.11088589483724812No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4640.11064743054727555No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT4570.10897818051746752No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA4540.10826278764754978No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)