FastQCFastQC Report
Sun 21 May 2023
EGAF00007938550

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938550
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences430067
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22990.5345678696575185No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA18430.428537878981647No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14520.33762181241527484No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG13940.32413554167141395No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT13770.3201826692120065No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG12440.28925725526487733No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG10050.23368451892379558No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9570.22252346727370387No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG9480.22043077008931164No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8950.20810710889233539No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8690.2020615392485357No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8340.1939232724203438No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG8250.1918305752359516No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7560.17578656348894472No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG7110.16532307756698375No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6870.15974255174193788No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6690.15555715737315348No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA6090.1416058428105388No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT5410.1257943529729089No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5380.12509678724477813No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5350.1243992215166474No Hit
GAAACTCTGTATCAGAAAACCGACGCAGGTA5220.12137643669474757No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG5200.12091139287599374No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4930.11463330132281714No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4860.11300564795717877No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT4820.11207556031967113No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA4810.11184303841029421No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4710.1095178193165251No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA4540.1055649468571176No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG4340.10091450866957939No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)