FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007938552

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938552
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences419495
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG20800.4958342769282113No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG15000.35757279586169083No Hit
ATGGACGAACTGCAGCCGACCATGCAACTGA9910.23623642713262374No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG8640.20596193041633395No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG7900.18832167248715717No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC6240.14875028307846339No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG5920.141122063433414No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5630.13420898938008796No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA5520.13158678887710223No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA5030.11990607754562033No Hit
GCGAAAACTGCGGCGGCCAAACCGGCTGCCA4920.1172838770426346No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4640.11060918485321636No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4590.1094172755336774No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT4560.10870212994195402No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4510.10751022062241505No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC4340.10345772893598254No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC4210.10035876470518124No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG4200.10012038284127345No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)