FastQCFastQC Report
Sun 21 May 2023
EGAF00007938557

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938557
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences432755
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT15500.35817032732146364No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC15240.35216230892768424No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT12220.28237686450763133No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA11690.2701297500895426No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA10460.24170720153435546No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT9320.21536435165393814No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA9270.2142089635012883No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA9080.20981848852121868No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT9020.20843202273803885No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA8890.20542801354114915No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6570.15181800325819458No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC6550.15135584799713464No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT6520.1506626151055447No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC6350.1467342953865351No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG6120.14141950988434565No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6010.13887765594851592No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5940.13726011253480608No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5890.13610472438215618No Hit
CACACCGTTCAGCTGCTGGGTGTGTTCATCAGCTTCGTTGTATT5670.1310210165104967No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT5370.1240886875945974No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC5340.12339545470300747No Hit
TTCCTGGCCTTCTTCACCCTCATCACCGTCACCACCTTCATCGC5260.12154683365876767No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5170.11946713498399789No Hit
CTCCTGACCTTCTTCACCTTCATCACCATCACCGCCTTCATCAC4910.11345911659021848No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG4850.11207265080703861No Hit
AACACACTGGCCGTTGCGGCAGACGTAGTTAGTACGGCCAACCA4730.10929971924067891No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC4580.10583355478272925No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA4550.10514032189113934No Hit
TTCATCACCATCACCGCCTTCGTCACCGTCATCGCCGTCATCGC4530.10467816663007937No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)