FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007938558

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938558
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences432755
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT25000.5776940763249414No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC22690.5243151436725167No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21890.5058289332301186No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG16020.37018636410902245No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA12220.28237686450763133No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12190.2816836316160414No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG10870.2511813843860845No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10190.2354681055100461No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9860.22784254370255685No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC9690.22391422398354727No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC7900.18255132811868147No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7590.1753879215722522No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG7080.1636029624152234No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6920.15990572032674377No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6730.1555152453466742No Hit
CGTGAAGGCGCGAAAAACACCAACAAACAGC6580.15204908088872457No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6560.15158692562766463No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6520.1506626151055447No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6420.14835183880024494No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT5890.13610472438215618No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5890.13610472438215618No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5560.12847916257466696No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5540.12801700731360702No Hit
GCACCAACCTGCAACATCAAAGTAACCGTTT5300.12247114418088759No Hit
GCTATTAAAGATCTGGTGATGACGAAACCGG5200.1201603678755878No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC5150.11900497972293791No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5030.1162320481565782No Hit
TCCTACACCAACGGCAAACTGACTATCACCC4940.1141523494818084No Hit
GCCGAGGGTCTGAAGGACGCGATTAAAGACC4680.10814433108802904No Hit
CTGCACCATGTGGACGTAGATCCGTCCGGTA4580.10583355478272925No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)