FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007938560

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938560
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences472032
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG24000.508440105755542No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12240.2593044539353264No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT9660.20464714256660566No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7750.1641837841502271No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7120.15083723137414412No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6660.1410921293471629No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6360.13473662802521863No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5970.1264744763066911No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5340.11312792353060808No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4970.10528947190021015No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)