FastQCFastQC Report
Wed 31 May 2023
EGAF00007938562

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938562
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences469510
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT52701.1224468062448085No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG49781.0602543076824775No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG25190.5365167941044918No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG20530.43726438201529255No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG17680.3765627995143873No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA9490.20212562032757556No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG8190.17443717918681179No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6580.1401461097740197No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6440.13716427765116823No Hit
GTAGGCTCCGTGTTCAAAGAAATCATTAACC5990.12757981725628847No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG5680.12097718898426019No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5480.11671742880875807No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG5410.11522651274733234No Hit
CGTCGCCAGCGTGCAATCGACAAACGCCAGC5200.1107537645630551No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG4910.10457711230857704No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA4810.10244723222082597No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)