FastQCFastQC Report
Sun 21 May 2023
EGAF00007938564

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938564
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences466945
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG54141.1594513272441078No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA12960.27754874771118654No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6520.13963100579297347No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6290.1347053721530373No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5820.1246399468888199No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5520.11821520735846834No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)