FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007938565

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938565
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences463767
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA15800.3406883197812695No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA14190.3059726112465958No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10150.2188599016316383No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG10090.2175661485185449No Hit
CAGAGCGAAAGTAATGTTTTTGCCATCACGCTTAACCTTCAGGT9550.20592237050070403No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC9540.2057067449818551No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG9040.19492546903940988No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT8850.19082858418128068No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA8470.1826348144650223No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA7760.16732540262675005No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG7330.15805350531624718No Hit
CTGGACGGAAACAGAACGACGGCTACGTTTGGAGTGGCGGGTAC6920.14921285904344206No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT6900.14878160800574425No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG6890.14856598248689537No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG6030.13002218786588954No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6010.12959093682819173No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG6000.12937531130934285No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG5980.12894406027164504No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5940.12808155819624942No Hit
GTTAGCGGACAGTTCCGCCGCTTTACGTTCCGCTTCCTGACGGT5920.1276503071585516No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG5880.12678780508315599No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5640.12161279263078227No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5590.12053466503653773No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG5510.11880966088574652No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA5380.11600652914071075No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG5330.11492840154646623No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA5230.11277214635797717No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5160.11126276772603484No Hit
TGCGGTTTTGCGTTCGGTTTCGGCTTTCTGTTTGACTGCCAGCT5000.10781275942445237No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)