FastQCFastQC Report
Sun 21 May 2023
EGAF00007938566

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938566
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences463767
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG53411.1516558961720003No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT36390.7846612630911644No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14000.3018757263884666No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10840.23373806243221273No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG10600.228563049979839No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10070.21713489748084705No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG10040.21648802092430036No Hit
GGTGACGTTGCTAAAGCGATCAATGACGCGG10020.21605676988660252No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9170.19772860078444565No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8860.19104420970012959No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8480.1828504399838712No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG8480.1828504399838712No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC8330.17961605720113763No Hit
GAACTGGCTCGCCGTCAACAGGAAGAACGTA7180.1548191225335136No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG7160.1543878714958158No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG7150.15417224597696688No Hit
ATGTGCGAAGACACCATCACCTACGAATGTC7040.15180036526962892No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA6820.14705660385495303No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6660.14360659555337055No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6600.14231284244027712No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6470.13950971069524137No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6280.13541282583711217No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6260.13498157479941436No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA6150.13260969409207643No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC6040.13023781338473847No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG5970.1287284347527961No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5780.12463154989466693No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT5750.12398467333812023No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT5700.12290654574387569No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5630.12139716711193337No Hit
GCAGCTGAACTGGCTCACCGTCAAGAAGCTG5610.12096591607423555No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5550.11967216296114214No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5420.11686903121610637No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA5310.11449715050876842No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA5200.11212526980143046No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)