FastQCFastQC Report
Sun 21 May 2023
EGAF00007938568

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938568
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences440811
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22480.5099691250898911No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA13300.30171660870531813No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG11850.2688226927186481No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11050.25067432527772676No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG10670.24205385074328906No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10410.23615563132498965No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9640.21868782766310277No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG7890.17898827388608723No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6960.1578907967360161No Hit
ACCGGCTTTCCACCTCAGCCGGGTATGGCCC6600.14972403138760149No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6520.14790919464350935No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6490.1472286308644748No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6380.1447332303413481No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5480.12431631697031154No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5420.12295518941224243No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5410.12272833481923093No Hit
TTTCCGCCTCAGCCGGGTATGGCACCGCGCC4900.11115875057564352No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG4830.10957076842456291No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT4790.10866335005251684No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4630.10503367656433257No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG4600.104353112785298No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)