FastQCFastQC Report
Wed 31 May 2023
EGAF00007938572

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938572
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences436317
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22140.5074292314991165No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8660.19847954583479444No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA7390.1693722683278442No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG7250.16616359206723552No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5960.1365979322373412No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT5780.13247249133084432No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5660.12972219739317972No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC4720.10817822821480713No Hit
GAAACCACTATCGCAGATAATAGCAAACGCT4520.10359440498536614No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)