FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007938573

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938573
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences461036
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA27430.594964384559991No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA25880.5613444503249204No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG19700.42729851898767124No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG14850.32210066025212786No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC13110.28435957278824214No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA11310.24531706851525695No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG11190.24271423489705793No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA9490.2058407586392386No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8940.19391110455582644No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC8210.1780772000451158No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG8040.17438985241933386No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA8030.17417294961781726No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG8020.1739560468163007No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG7380.16007426751923928No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6930.150313641450993No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT6420.1392515985736472No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6340.13751637616151452No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6040.13100929211601697No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT5200.11278945678862388No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG4980.10801759515525902No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT4940.10714998394919267No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT4860.10541476153706No Hit
CGGAGCCTGCGGTGGCGGCGGCTCTTGATAACCCTGATACGGCG4800.10411334472796051No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)