FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007938574

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938574
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences461036
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT69191.5007504836932475No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG48641.0550152265766664No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC20370.4418310066892824No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC19360.41992382373610737No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC15540.33706695355677213No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11880.2576805282017023No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC11840.2568129169956359No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10210.22145776034843265No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8930.19369420175430985No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC8770.1902237569300445No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8680.18827163171639524No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA8660.18783782611336208No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT8000.1735222412132675No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7810.1694010879844524No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6670.1446741686115618No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6230.13513044534483207No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5610.12168247165080384No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA5420.11756131842198875No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT5350.11604299881137264No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5040.10931901196435853No Hit
ATGTCTGACGAAGGCCCGGGTACCGGCCCGG4910.10649927554464295No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG4870.1056316643385766No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4770.10346263632341075No Hit
TCCATCTCTAGCAGCGAGGAAATCGTCCCAA4620.10020909430066198No Hit

[OK]Adapter Content

Adapter graph