FastQCFastQC Report
Wed 31 May 2023
EGAF00007938575

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938575
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences482070
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA22150.45947683946314855No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA21570.44744539174808634No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT16010.3321094446864563No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC15100.31323251809903124No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT14720.3053498454581285No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC11770.24415541311427802No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG10880.22569336403426887No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT10220.212002406289543No Hit
GATAACGAAGCTAGCGGAGGTCGGGGTAATGACCACAGAGGACG8850.18358329703155143No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG8150.1690625842719937No Hit
CGGGCTCGGTGGGTGACGATGGTGGGTGGAAACGCCACGACGAC7830.1624245441533387No Hit
TTTGGCAACAACCTGTACTGGCGGCACCGGCGGCGGGCTCAGGT7820.16221710539963075No Hit
AGCGCCGGTCGGAGGCGGGCAAACGTAGAAGTTTGCGTCGGTGT7450.15454187151243595No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC7400.15350467774389612No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG7200.14935590266973675No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC7030.14582944385670132No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT6610.13711701620096667No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG6490.13462775115647108No Hit
CCAAACTTCGTCGGCCGCATCACGAGAAGCGGTCTGAGTGACGG6080.12612276225444438No Hit
AAAGCCATCCTGTTTAGCTTTATTGATGATGTCCTTGATGGAGT5850.12135167091916113No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT5690.11803265085983364No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC5640.1169954570912938No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5570.11554338581533802No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG5570.11554338581533802No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5440.11284668201713444No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG4940.10247474433173606No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)