FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007938577

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938577
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences499482
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT15490.3101212856519354No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC14110.28249266239824455No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC12240.2450538758153447No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10480.20981737079614482No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG8400.16817422850072675No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT7770.15556116136317225No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC7250.14515037578931772No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT6010.12032465634397235No Hit
TTCAACTTTCGGGCTCGGCGGCAGGATTGCACCGGTCTGTTTTT5900.11812237478027235No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5530.11071470042964511No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA5340.10691075954689058No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)