FastQCFastQC Report
Wed 31 May 2023
EGAF00007938578

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938578
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences499482
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA33350.6676917286308616No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG25290.5063245522361166No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA17540.351163805702708No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA16170.323735389863899No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT12910.2584677726124265No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10450.20921674855149935No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG7730.15476033170364498No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA6430.12873336776900868No Hit
ACTCTGGCTACCCCAGCCGTGCGTCGTCTGG5960.11932361926956328No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5580.1117157375040542No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)