FastQCFastQC Report
Sun 21 May 2023
EGAF00007938580

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938580
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences488487
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG24620.5040052242946076No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC19910.4075850534405214No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG12700.2599864479505084No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12310.2520026121473038No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA12070.2470894824222548No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10900.22313797501264104No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9230.18895078067584192No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8690.17789623879448174No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8440.17277839533088904No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7250.14841746044418788No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT6720.13756763230137137No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6590.13490635370030318No Hit
ACTAGCCCGGAAGAACCGATCTACACCCAGG6550.13408749874612835No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG5170.10583700282709672No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5130.10501814787292191No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT5020.10276629674894112No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)