FastQCFastQC Report
Sun 21 May 2023
EGAF00007938583

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938583
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences485560
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC21100.4345497981711838No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA17030.3507290551116237No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT16210.3338413378367246No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA15440.31798335942005107No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA13510.2782354394925447No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG13290.2737045885163522No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG12730.26217151330422606No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG11880.24466595271439162No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT11810.24322431831287583No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA11090.22839607875442788No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG10600.21830463794381746No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10170.20944888376307766No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG10090.2078013015899168No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG8670.17855671801631107No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG8560.17629129252821485No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT8270.17031880715050665No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC7410.1526072987890271No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG7260.14951808221435042No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT6770.13942664140374003No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG6700.13798500700222424No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC6400.13180657385287092No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC6340.13057088722300025No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA6140.12645193179009803No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG6130.1262459840184529No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT5980.12315676744377627No Hit
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCGGTT5770.11883186423922894No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA5650.11636049097948761No Hit
TGGGATCTGCAGAGTCTGGTTCGGCATGATCAGATAACCACGCA5030.10359172913749073No Hit
ACCGCCATGAGTACCTTTGCAGCCAATACAAGACGGGCGTTTTT4990.10276793805091028No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)