FastQCFastQC Report
Sun 21 May 2023
EGAF00007938584

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938584
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences485560
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC29500.6075459263530768No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA18060.3719416755910701No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG17050.3511409506549139No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG16860.34722794299365684No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT15480.31880715050663155No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC14230.2930636790509927No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC12990.2675261553669989No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC12990.2675261553669989No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG12760.26278935661916136No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT12670.2609358266743554No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG11750.2419886316830052No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC10520.21665705577065655No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG10500.21624516022736634No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG10310.21233215256610924No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10190.2098607793063679No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG9260.1907076365433726No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC8820.1816459345909877No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8650.17814482247302083No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG8610.1773210313864404No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT8010.16496416508773376No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC7690.1583738363950902No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC7220.14869429112777No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT7140.1470467089546091No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC6990.14395749237993244No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6870.14148611912019113No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG6530.13448389488425735No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6370.1311887305379356No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG5950.12253892412884093No Hit
GGTGGTGATAACCATGGCCGTGGCCGTGGCC5520.11368316994810115No Hit
GTGGGCGGCTCTGATGCACAGAACACCTCTA5140.10585715462558694No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG5130.10565120685394185No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC5030.10359172913749073No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)