FastQCFastQC Report
Wed 31 May 2023
EGAF00007938585

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938585
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences490436
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA11230.22897992806400835No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA9780.199414398616741No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8200.16719816652937386No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)