FastQCFastQC Report
Sun 21 May 2023
EGAF00007938589

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938589
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences465584
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT13540.2908175538678305No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC10480.2250936458297536No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC8120.17440461871541976No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC7940.17053850647788582No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG6970.14970445719784184No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC6670.14326093680195195No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5370.11533901508642909No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5290.11362074298085845No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG5260.11297639094126946No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5100.10953984673012819No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG4980.10696243857177222No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)