FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007938590

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938590
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences465584
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG35930.7717189594144129No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA26380.5666002268119179No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA13330.28630708959070755No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA10540.22638234990893158No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10300.2212275335922197No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG7440.15979930581806936No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5820.12500429568026394No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5810.12478951166706759No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5740.12328602357469329No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5440.11684250317880339No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5210.11190247087528782No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)