FastQCFastQC Report
Wed 31 May 2023
EGAF00007938591

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938591
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences434332
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT16840.3877218349097004No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC16230.37367727913209253No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG11280.25970916257609383No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10930.2516508109004172No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA10190.23461315307184366No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA10010.23046885792435282No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA9560.22010812005562566No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG8650.19915640569886628No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT8560.19708425812512087No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG8500.1957028264092906No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT7030.16185774937144856No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6360.14643176187801038No Hit
TTCCTGGCCTTCTTCACCCTCATCACCGTCACCACCTTCATCGC6200.1427479439691296No Hit
TTCATCACCATCACCGCCTTCGTCACCGTCATCGCCGTCATCGC6110.14067579639538416No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT5830.13422911505484283No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC5760.1326174447197075No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC4940.11373787793669358No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA4590.10567952626101693No Hit
TTCCTGACCTTCCTCACCTTCGTCGCCATCGCCACCTTCATCAC4490.10337714006796643No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG4450.10245618559074625No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT4440.1022259469714412No Hit
GTCGAAAGCGACGGTTTTCATGCCGGTGGTGGATTTCACCGGGC4370.10061427663630587No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)