FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007938592

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938592
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences434332
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG37350.8599412431043533No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC21260.4894873046425315No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG17640.4061409244541042No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG11350.2613208329112292No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT11300.260169639814704No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10920.25142057228111214No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10660.2454343681791809No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG10590.2438226978440456No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10410.2396784026965547No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG9310.21435215457299944No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT8720.20076807603400162No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG8360.19247948573901993No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7410.1706068169050404No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6670.15356915907646684No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC6420.14781319359384065No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6290.14482009154287503No Hit
GCCGAGGGTCTGAAGGACGCGATTAAAGACC6270.14435961430426494No Hit
GCACCAACCTGCAACATCAAAGTAACCGTTT6230.14343865982704473No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA6220.1432084212077397No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT5840.13445935367414788No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5050.11627050274904913No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC4630.1066004807382371No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG4620.10637024211893205No Hit
GCACCGACCTGCAACATCCGTGTGACCGTTT4610.106140003499627No Hit
TCTACTGCCAAGAGCTCCGTATCCAACGCGC4570.10521904902240684No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC4500.1036073786872715No Hit
GCTATTAAAGATCTGGTGATGACGAAACCGG4470.10291666282935634No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA4470.10291666282935634No Hit
CCGCAGCTGCAGACTACCGGTCGTCCGTCTC4420.1017654697328311No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4370.10061427663630587No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)