FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007938593

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938593
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences437476
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG18380.4201373332479953No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA14020.3204747231848147No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA13140.3003593339977507No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT12470.28504420813941794No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG12410.283672704331209No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG11960.2733864257696422No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC10930.24984227706205597No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC9750.22286936883394748No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG7230.16526620888917334No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG6480.148122411286562No Hit
AACCGCCGGCGGGCCGGTATCGCTTGGGGATACGGTTGGCGGTG5940.13577887701268185No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC5450.12457826257897577No Hit
ACCCAGGGTGATGGAGCGAACACGGTCGCTGTAGCCGCATTCTT5430.12412109464290612No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG5300.12114950305845348No Hit
ACCCAGCGTGATAGAACGCACGCGGTCAGAGTAACCACATTCCT5290.12092091909041867No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC5110.11680640766579195No Hit
AGTCACGTTACGAGAAGAGGTGGTTTTGCTGGAGGCCGGCTGCG4980.11383481608133932No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)