FastQCFastQC Report
Sun 21 May 2023
EGAF00007938594

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938594
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences437476
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG36830.8418747542722343No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT33220.7593559418116651No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA26100.5966041565708747No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG18140.4146513180151597No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG13230.3024165897100641No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA13170.3010450859018552No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA12490.2855013760754876No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG11860.27110058608929405No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG7340.16778063253755635No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG5980.1366932128848211No Hit
ATCGAAGTGATTGACGTTGAAACCACTGAAG5720.13075002971591584No Hit
GATGCAGCTTCCAACTCTGCAAACCGTCAGG5640.12892135797163728No Hit
GATGCGGCCTCCAATTCTGCAAACCGTCAGG5430.12412109464290612No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA5400.12343534273880168No Hit
GTTGCGACCCCACACGCCTCCGCGCGCGCTC5100.11657782369775714No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA4710.10766304894439924No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA4700.10743446497636443No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT4670.10674871307225996No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC4420.10103411387138951No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG4410.1008055299033547No Hit

[OK]Adapter Content

Adapter graph