FastQCFastQC Report
Wed 31 May 2023
EGAF00007938595

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938595
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences461639
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACGACGAGAACGGCGAGAGCCTGCGGACTCACCCTGACCGGACT10700.23178284330396698No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT10530.22810031214867027No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG10150.21986877191918364No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10060.21791919660167358No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT9520.20622174469661358No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT8540.1849930356837269No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG8330.1804440266095369No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT7670.16614714094779687No Hit
AACGGTTACGCTGCTCTGTTCAGACGGACCCGGGCGTTCCGGGG6250.1353871748270835No Hit
CGGGTGGGTTTTCGGGGTCGGCCAAGGCAGTTTACGCGGCTTTT6000.12997168783400018No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG5870.12715563459759682No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT5860.12693901511787348No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5620.12174014760451349No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC5410.11719113853032347No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5320.11524156321281347No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG5210.11285874893585682No Hit
AACGGTGACGCTAGACTGTTCGGAAGGACCCGGACGTTCTGGAG4830.10462720870637013No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG4780.10354411130775346No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG4640.1005114385916268No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)