FastQCFastQC Report
Wed 31 May 2023
EGAF00007938596

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938596
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences461639
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG37810.8190382528339244No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA12220.2647090042219137No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC11130.2410974809320703No Hit
GGCCGCTCCGACGCGTCCCATGGCCAGTCTG10590.22940002902701026No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT10240.22181834723669364No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9760.2114206122099736No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT9690.20990427585191027No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9440.20448878885882693No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9370.2029724525007636No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG8570.1856428941228969No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA7790.16874657470447688No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC6540.14166913973906017No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC6290.13625365274597684No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6050.13105478523261682No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA6000.12997168783400018No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5920.1282387319962135No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC5660.12260662552340681No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5480.11870747488838682No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5190.11242550997641013No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG4790.10376073078747679No Hit

[OK]Adapter Content

Adapter graph