FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007938597

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938597
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences416927
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT15180.36409251499663015No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC12860.3084472821381201No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACGGCG12220.2930968730737035No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT12070.2894991209492309No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA11190.2683923084856582No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA10560.25328174956287314No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC9490.2276177844083017No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC8960.21490572690183174No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8820.21154782491899063No Hit
AATATCAACGGTCTGGACACCCAGGCCCGGTGCCACTTTCTTGA8350.2002748682623097No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA7190.1724522518330547No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG6480.1554228917772176No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG5980.14343038469564218No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5760.13815368157974897No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC5710.13695443087159143No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5070.12160402180717489No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5020.12040477109901734No Hit
GGCGCCAATCAGACGGTGACGTTTCTGGGTGCGTTTAGATGGGA4930.11824611982433376No Hit
CTGTTCGGTTTCCAGTTCGCCTACGCTCACTTTGGTGTTGTTAC4480.10745286345091587No Hit
CAGGTCATCTTCGTCCGCATCGCCGTCTTTGTTCGGCACCTGGG4420.1060137626011268No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG4360.10457466175133777No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT4250.10193631019339118No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT4180.10025735920197061No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)