FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007938598

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938598
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences416927
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG36840.8836079217704778No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT28370.68045485180859No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA26910.6454367311303898No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15210.3648120654215246No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA13370.32067963936132704No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12890.30916683256301464No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA12680.30412997958875293No Hit
ATGTCCAACATGGACATCGATGGTATTAACA12370.2966946251981762No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9340.22402003228382908No Hit
ATGGACGAACTGCAGCCGACCATGCAACTGA8480.2033929201035193No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7680.18420490877299864No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC6480.1554228917772176No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6230.14942663823642988No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5560.13335667874711882No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5530.13263712832222427No Hit
TTCCCGGTGCTGGCGAACGAGGGCAAATCTG5160.12376267308185845No Hit
GCACTGGTAAGCGCTATGGAACGTACTGAAC4980.1194453705324913No Hit
CTGTCTGCTGAGCAGCTGAACGTCACTGACG4670.11201001614191454No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG4560.10937166458396792No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG4450.10673331302602133No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA4250.10193631019339118No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4250.10193631019339118No Hit

[OK]Adapter Content

Adapter graph