FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007938601

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938601
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences470092
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG7560.16081958425159332No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT7480.15911778970924842No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC6040.12848548794704015No Hit
CTGGACGGAAACAGAACGACGGCTACGTTTGGAGTGGCGGGTAC5480.11657292615062584No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG5400.11487113160828094No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA4940.10508581298979773No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA4860.10338401844745283No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA4840.10295856981186662No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)