FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007938602

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938602
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences470092
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT10230.21761697710235445No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9430.20059903167890542No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8250.17549756217931808No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT7690.16358500038290377No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7420.1578414438024897No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG5550.11806199637517763No Hit
ATGTGCGAAGACACCATCACCTACGAATGTC5510.11721109910400518No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5270.11210571547697046No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5160.10976574798124622No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)