FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007938604

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938604
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences460453
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG39920.8669723077056725No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT34330.7455701233350636No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA11150.2421528364458479No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9470.2056670279051282No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7030.15267573454836866No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6170.13399847541442883No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5300.115104038848699No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5080.11032613534931904No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5000.10858871589499905No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT4850.10533105441814909No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG4620.10033597348697912No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)