FastQCFastQC Report
Sun 21 May 2023
EGAF00007938606

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938606
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences473174
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG42210.8920608486518702No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC22050.4660019358629172No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG18750.39626014954329697No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT17600.3719561937046414No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG13950.294817551260213No Hit
ATGTCCAACATGGACATCGATGGTATTAACA12130.2563538994112103No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12120.2561425606647872No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT11760.24853436579355587No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11060.23374065354393944No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG10400.2197922962800154No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC10280.21725623132293828No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7840.1656895771957039No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7600.1606174472815497No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC7570.15998343104228044No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT7250.1532205911567415No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT7040.14878247748185658No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG7000.1479371224961642No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC6900.14582373503193327No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT6590.13927223389281745No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC5740.12130844044685464No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5600.11834969799693136No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5320.1124322130970848No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC5210.11010748688643078No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5120.10820543816862295No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA5060.10693740569008442No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4890.10334464700089184No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC4810.10165393702950712No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)