FastQCFastQC Report
Sun 21 May 2023
EGAF00007938609

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938609
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences452839
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA23040.5087900997926416No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA22350.4935528962832265No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC20190.44585382442766636No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT16660.36790117458964444No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC15520.34272666444365435No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA14610.322631222134136No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA14060.3104856251338776No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT13390.29569007969719924No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA12360.2729446889512608No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT11330.2501992982053224No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT11220.24777017880527075No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT11110.24534105940521908No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC10110.22325815576838565No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA9400.20757929418623397No Hit
AACCGCCGGCGGGCCGGTATCGCTTGGGGATACGGTTGGCGGTG8940.19742115851329062No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT8890.19631701333144894No Hit
GCGCAGACCCGGGAAACGGTCACGTGCCGCCTGCAGTGCGCGAG8090.1786506904219822No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA7780.17180499029456386No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA7650.1689342128217755No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC7640.16871338378540718No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7480.16518011920351383No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC6710.14817628340315211No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT6590.1455263349667321No Hit
CGGCTGGTCTTCGGCCGTTGCTTCATCGTCGTGCAGATAATCCG6160.13603068640289376No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT6120.1351473702574204No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5750.12697669591179206No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC5740.1267558668754237No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5620.12410591843900372No Hit
CGGCTGGTCCTCTGCAGTAGCTTCTTCATCGGACAGGTAATCCG5490.12123514096621535No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA5420.11968933771163703No Hit
TTCCATCGGCTGCTGCGGGCTTACCTGGGTCAGCTGCGGTGGCT5280.11659773120248035No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC5080.11218115047511366No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG5020.11085617625690367No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT5010.11063534722053533No Hit
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCGGTT4590.1013605276930653No Hit
GTGGGAGTTACGGCATACCGGTGCCGCGTTAGATGGACCCGGGG4590.1013605276930653No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)